Introduction to Genome Science
Preface ..........................................................................................................................................................................V Chapter 1 Characterization of Transcription Termination-Associated RNAs: New Insights into their Biogenesis, Tailing, and Expression in Primary Tumors....................................................................... 1 Ilaria Laudadio, Sara Formichetti, Silvia Gioiosa, Filippos Klironomos, Nikolaus Rajewsky, Giuseppe Macino, Claudia Carissimi and Valerio Fulci Chapter 2 The Progress of Methylation Regulation in Gene Expression of Cervical Cancer................................... 12 Chunyang Feng, Junxue Dong, Weiqin Chang, Manhua Cui and Tianmin Xu Chapter 3 Molecular Crosstalking among Noncoding RNAs: A New Network Layer of Genome Regulation in Cancer............................................................................................................................ 23 Marco Ragusa, Cristina Barbagallo, Duilia Brex, Angela Caponnetto, Matilde Cirnigliaro, Rosalia Battaglia, Davide Barbagallo, Cinzia Di Pietro and Michele Purrello Chapter 4 Expression Characterization of Six Genes Possibly Involved in Gonad Development for Stellate Sturgeon Individuals (Acipenser stellatus, Pallas 1771)........................................................... 40 Alexandru Burcea, Gina-Oana Popa, Iulia Elena Florescu (Gune), Marilena Maereanu, Andreea Dudu, Sergiu Emil Georgescu and Marieta Costache Chapter 5 Transcriptomic Profiling of Fruit Development in Black Raspberry Rubus coreanus............................. 50 Qing Chen, Xunju Liu, Yueyang Hu, Bo Sun, Yaodong Hu, Xiaorong Wang, Haoru Tang and Yan Wang Chapter 6 Endometriosis Malignant Transformation: Epigenetics as a Probable Mechanism in Ovarian Tumorigenesis........................................................................................................................................ 63 Jiaxing He, Weiqin Chang, Chunyang Feng, Manhua Cui and Tianmin Xu Chapter 7 The Maize Corngrass1 miRNA-Regulated Developmental Alterations are Restored by a Bacterial ADP-Glucose Pyrophosphorylase in Transgenic Tobacco.................................................. 76 Ayalew Ligaba-Osena, Kay Di Marco, Tom L. Richard and Bertrand Hankoua Chapter 8 The Influence of Metabolic Syndrome and Sex on the DNA Methylome in Schizophrenia.................................................................................................................................................... 89 Kyle J. Burghardt, Jacyln M. Goodrich, Brittany N. Lines and Vicki L. Ellingrod Chapter 9 The Effect of Citalopram on Genome-Wide DNA Methylation of Human Cells.................................. 101 Riya R. Kanherkar, Bruk Getachew, Joseph Ben-Sheetrit, Sudhir Varma, Thomas Heinbockel, Yousef Tizabi and Antonei B. Csoka Chapter 10 Effect of Gegen Qinlian Decoction on Cardiac Gene Expression in Diabetic Mice.............................. 113 Jing Han, Zhenglin Wang, Wei Xing, Yueying Yuan, Yi Zhang, Tiantian Lv, Hongliang Wang, Yonggang Liu and Yan Wu Chapter 11 Topological Characterization of Human and Mouse m5C Epitranscriptome Revealed by Bisulfite Sequencing.................................................................................................................... 123 Zhen Wei, Subbarayalu Panneerdoss, Santosh Timilsina, Jingting Zhu, Tabrez A. Mohammad, Zhi-Liang Lu, João Pedro de Magalhães, Yidong Chen, Rong Rong, Yufei Huang, Manjeet K. Rao and Jia Meng Chapter 12 Changes in miRNA Gene Expression during Wound Repair in Differentiated Normal Human Bronchial Epithelium............................................................................................................ 142 Beata Naro?na, Wojciech Langwi?ski, Claire Jackson, Peter M. Lackie, John W. Holloway, Zuzanna Stachowiak, Monika Dmitrzak-W?glarz and Aleksandra Szczepankiewicz Chapter 13 Differential Expression Profiling of Long Noncoding RNA and mRNA during Osteoblast Differentiation in Mouse.............................................................................................................. 150 Minjung Kim, Youngseok Yu, Ji-Hoi Moon, InSong Koh and Jae-Hyung Lee Chapter 14 Exploring Long Noncoding RNAs in Glioblastoma: Regulatory Mechanisms and Clinical Potentials....................................................................................................................................... 163 Tao Zeng, Lei Li, Yan Zhou and Liang Gao Chapter 15 Expression Analysis of Nitrogen Metabolism-Related Genes Reveals Differences in Adaptation to Low-Nitrogen Stress between Two Different Barley Cultivars at Seedling Stage................................................................................................................................................. 176 Zhiwei Chen, Chenghong Liu, Yifei Wang, Ting He, Runhong Gao, Hongwei Xu, Guimei Guo, Yingbo Li, Longhua Zhou, Ruiju Lu and Jianhua Huang Chapter 16 Regulation of Long Noncoding RNAs Responsive to Phytoplasma Infection in Paulownia tomentosa......................................................................................................................................... 186 Guoqiang Fan, Yabing Cao and Zhe Wang Chapter 17 Calibrating Transcriptional Activity using Constitutive Synthetic Promoters in Mutants for Global Regulators in Escherichia coli....................................................................................... 202 Ananda Sanches-Medeiros, Lummy Maria Oliveira Monteiro and afael Silva-Rocha Chapter 18 Multitarget Effects of Danqi Pill on Global Gene Expression Changes in Myocardial Ischemia........................................................................................................................................... 211 Qiyan Wang, Hui Meng, Qian Zhang, Tianjiao Shi, Xuefeng Zhang, Mingyan Shao, Linghui Lu, Jing Wang, Wei Wang, Chun Li and Yong Wang Permissions List of Contributors Index IV Contents