ADVANCES IN GENETICS
DETECTION OF PROKARYOTIC GENES IN THE AMPHIMEDON QUEENSLANDICA GENOME ? ABSTRACT ? INTRODUCTION ? RESULTS ? DISCUSSION ? MATERIALS AND METHODS ? ACKNOWLEDGMENTS ? REFERENCES CHAPTER PROKARYOTIC EXPRESSION OF ?-13 GIARDIN GENE AND ITS INTRACELLULAR LOCALIZATION IN GIARDIA LAMBLIA A NOVEL PCR-BASED METHOD FOR HIGH THROUGHPUT PROKARYOTIC EXPRESSION OF ANTIMICROBIAL PEPTIDE GENES ? BACKGROUND ? CONCLUSIONS ? METHODS IN SILICO PRIORITISATION OF CANDIDATE GENES FOR PROKARYOTIC GENE FUNCTION DISCOVERY: AN APPLICATION OF PHYLOGENETIC PROFILES ? CONCLUSION ? DECLARATIONS MODELING GENE REGULATION IN LIVER HEPATOCELLULAR CARCINOMA WITH RANDOM FORESTS AND PROKARYOTIC EXPRESSION, ANTIBODY PREPARATION OF THE UL45 DES-TRANSMEMBRANE DOMAIN ? ACKNOWLEDGEMENTS AUTOMATIC ASSIGNMENT OF PROKARYOTIC GENES TO FUNCTIONAL CATEGORIES USING LITERATURE PROFILING ? AUTHOR CONTRIBUTIONS ? FILE S1: ORIGINAL JCVI-CMR ONTOLOGY ? FILE S2: REARRAGED JCVI-CMR ONTOLOGY THE GOLDILOCKS APPROACH: A REVIEW OF EMPLOYING DESIGN OF EXPERIMENTS IN PROKARYOTIC RECOMBINANT PROTEIN PRODUCTION ? PRODUCTION OF RECOMBINANT PROTEINS IN A PROKARYOTIC EXPRESSION SYSTEM ? DESIGN OF EXPERIMENTS (DOE) TO OPTIMISE RECOMBINANT PROTEIN PRODUCTION ? DEFINING A DOE WORKFLOW TO OPTIMISE RECOMBINANT PROTEIN PRODUCTION ? A SUGGESTED DOE WORKFLOW FOR RECOMBINANT PROTEIN PRODUCTION EASYGENE – A PROKARYOTIC GENE FINDER THAT RANKS ORFS BY STATISTICAL SIGNIFICANCE ? RESULTS AND DISCUSSION CHAPTER 10 PRODIGAL: PROKARYOTIC GENE RECOGNITION AND TRANSLATION INITIATION SITE IDENTIFICATION ? IMPLEMENTATION CHAPTER 11 NOVEL GENE SETS IMPROVE SET-LEVEL CLASSIFICATION OF PROKARYOTIC GENE EXPRESSION DATA