FOUNDATIONS OF SYSTEMS BIOLOGY
CONTENTS SYSTEMS BIOLOGY: TOWARD SYSTEM-LEVEL UNDERSTANDING OF BIOLOGICAL SYSTEMS I ADVANCED MEASUREMENT SYSTEMS AUTOMATIC ACQUISITION OF CELL LINEAGE THROUGH 4D MICROSCOPY AND ANALYSIS OF EARLY C ELEGANS EMBRYOGENESIS II REVERSE ENGINEERING AND DATA MINING FROM GENE EXPRESSION DATA THE DBRF METHOD FOR INFERRING A GENE NETWORK FROM LARGE-SCALE STEADY-STATE GENE EXPRESSION DATA THE ANALYSIS OF CANCER ASSOCIATED GENE EXPRESSION MATRICES AUTOMATED REVERSE ENGINEERING OF METABOLIC PATHWAYS FROM OBSERVED DATA BY MEANS OF GENETIC PROGRAMMING III SOFTWARE FOR MODELING AND SIMULATION THE ERATO SYSTEMS BIOLOGY WORKBENCH: AN INTEGRATED ENVIRONMENT FOR MULTISCALE AND MULTITHEORETIC SIMULATIONS IN SYSTEMS BIOLOGY AUTOMATIC MODEL GENERATION FOR SIGNAL TRANSDUCTION WITH APPLICATIONS TO MAP-KINASE PATHWAYS MODELING LARGE BIOLOGICAL SYSTEMS FROM FUNCTIONAL GENOMIC DATA: PARAMETER ESTIMATION IV CELLULAR SIMULATION TOWARDS A VIRTUAL BIOLOGICAL LABORATORY COMPUTATIONAL CELL BIOLOGY — THE STOCHASTIC APPROACH COMPUTER SIMULATION OF THE CELL: HUMAN ERYTHROCYTE MODEL AND ITS APPLICATION V SYSTEM-LEVEL ANALYSIS CONSTRUCTING MATHEMATICAL MODELS OF BIOLOGICAL SIGNAL TRANSDUCTION PATHWAYS: AN ANALYSIS OF ROBUSTNESS COMBINATION OF BIPHASIC RESPONSE REGULATION AND POSITIVE FEEDBACK AS A GENERAL REGULATORY MECHANISM IN HOMEOSTASIS AND SIGNAL TRANSDUCTION DISTINCT ROLES OF RHO-KINASE PATHWAY AND MYOSIN LIGHT CHAIN KINASE PATHWAY IN PHOSPHORYLATION OF MYOSIN LIGHT CHAIN: KINETIC SIMULATION STUDY