MOLECULAR DYNAMICS IN BIOSYSTEMS
CONTENTS CHAPTER 1 INTRODUCTION TO EVOLUTIONARY PROCESSES ORIGINS OF EVOLUTIONARY THEORY GENOTYPES AND PHENOTYPES MUTATIONS SELECTION EVOLUTION THE RED QUEEN HYPOTHESIS THE EMERGENCE OF DIVERSITY EVOLUTIONARY EXTINCTION EXAMPLES CHAPTER 2 MODELING APPROACHES OVERVIEW POPULATION GENETICS INDIVIDUAL-BASED EVOLUTIONARY MODELS QUANTITATIVE GENETICS EVOLUTIONARY GAME THEORY REPLICATOR DYNAMICS FITNESS LANDSCAPES ADAPTIVE DYNAMICS A COMPARATIVE ANALYSIS CHAPTER 3 THE CANONICAL EQUATION OF ADAPTIVE DYNAMICS THE EVOLVING COMMUNITY THE RESIDENT-MUTANT MODEL THE EXAMPLE OF RESOURCE-CONSUMER COMMUNITIES DOES INVASION IMPLY SUBSTITUTION? THE AD CANONICAL EQUATION EVOLUTIONARY STATE PORTRAITS EVOLUTIONARY BRANCHING THE ROLE OF BIFURCATION ANALYSIS WHAT SHOULD WE EXPECT FROM THE AD CANONICAL EQUATION CHAPTER 4 EVOLUTIONARY BRANCHING AND THE ORIGIN OF DIVERSITY INTRODUCTION A MARKET MODEL AND ITS AD CANONICAL EQUATION A SIMPLE EXAMPLE OF TECHNOLOGICAL BRANCHING DISCUSSION AND CONCLUSIONS CHAPTER 5 MULTIPLE ATTRACTORS AND CYCLIC EVOLUTIONARY REGIMES A MODEL OF RESOURCE-CONSUMER COEVOLUTION THE CATALOG OF EVOLUTIONARY SCENARIOS CHAPTER 6 CATASTROPHES OF EVOLUTIONARY REGIMES A MODEL FOR THE EVOLUTION OF COOPERATION CATASTROPHIC DISAPPEARANCE OF EVOLUTIONARY ATTRACTORS EVOLUTIONARY BRANCHING AND THE ORIGIN OF CHEATERS CHAPTER 7 BRANCHING-EXTINCTION EVOLUTIONARY CYCLES A MODEL OF CANNIBALISTIC DEMOGRAPHIC INTERACTIONS COEVOLUTION OF DWARFS AND GIANTS THE BRANCHING-EXTINCTION EVOLUTIONARY CYCLE CHAPTER 8 DEMOGRAPHIC BISTABILITY AND EVOLUTIONARY REVERSALS BIOLOGICAL BACKGROUND ASYMMETRIC COMPETITION AND THE OCCURRENCE OF EVOLUTIONARY REVERSALS SLOW-FAST APPROXIMATION OF THE AD CANONICAL EQUATION CHAPTER 9 SLOW-FAST POPULATIONS DYNAMICS AND EVOLUTIONARY RIDGES THE AD CANONICAL EQUATION FOR GENERAL DEMOGRAPHIC ATTRACTORS EVOLUTIONARY SLIDING AND PSEUDO-EQUILIBRIA RESULTS AND DISCUSSION CONCLUDING REMARKS CHAPTER 10 THE FIRST EXAMPLE OF EVOLUTIONARY CHAOS 10 1 INTRODUCTION 10 2 A TRITROPHIC FOOD CHAIN MODEL AND ITS AD CANONICAL EQUATION 10 3 THE CHAOTIC EVOLUTIONARY ATTRACTOR 10 4 FEIGENBAUM CASCADE OF PERIOD-DOUBLING BIFURCATIONS 10 5 DISCUSSION AND CONCLUSIONS