COMPUTATIONAL MORPHOLOGY

By H. LUNAK

CONTENTS PART I VIDEO BIOINFORMATICS: AN INTRODUCTION LIVE IMAGING AND VIDEO BIOINFORMATICS VIDEO BIOINFORMATICS METHODS FOR ANALYZING CELL DYNAMICS: A SURVEY PART II ORGANISMAL DYNAMICS: ANALYZING BRAIN INJURY AND DISEASE HIGH- AND LOW-LEVEL CONTEXTUAL MODELING FOR THE DETECTION OF MILD TRAUMATIC BRAIN INJURY AUTOMATED IDENTI?CATION OF INJURY DYNAMICS AFTER NEONATAL HYPOXIA-ISCHEMIA A REAL-TIME ANALYSIS OF TRAUMATIC BRAIN INJURY FROM T2 WEIGHTED MAGNETIC RESONANCE IMAGES USING A SYMMETRY-BASED ALGORITHM PART III DYNAMICS OF STEM CELLS BIO-INSPIRED SEGMENTATION AND DETECTION METHODS FOR HUMAN EMBRYONIC STEM CELLS A VIDEO BIOINFORMATICS METHOD TO QUANTIFY CELL SPREADING AND ITS APPLICATION TO CELLS TREATED WITH RHO-ASSOCIATED PROTEIN KINASE AND BLEBBISTATIN EVALUATION OF DYNAMIC CELL PROCESSES AND BEHAVIOR USING VIDEO BIOINFORMATICS TOOLS PART IV DYNAMIC PROCESSES IN PLANT AND FUNGAL SYSTEMS VIDEO BIOINFORMATICS: A NEW DIMENSION IN QUANTIFYING PLANT CELL DYNAMICS 11 UNDERSTANDING GROWTH OF POLLEN TUBE IN VIDEO AUTOMATIC IMAGE ANALYSIS PIPELINE FOR STUDYING GROWTH IN ARABIDOPSIS QUANTITATIVE ANALYSES USING VIDEO BIOINFORMATICS AND IMAGE ANALYSIS TOOLS DURING GROWTH AND DEVELOPMENT IN THE MULTICELLULAR FUNGUS NEUROSPORA CRASSA PART V DYNAMICS OF INTRACELLULAR MOLECULES QUANTI?CATION OF THE DYNAMICS OF DNA REPAIR TO IONIZING RADIATION VIA COLOCALIZATION OF 53BP1 AND ?H2AX A METHOD TO REGULATE CO?LIN TRANSPORT USING OPTOGENETICS AND LIVE VIDEO ANALYSIS PART VI SOFTWARE, SYSTEMS AND DATABASES INTEGRATED 5-D CELL TRACKING AND LINKED ANALYTICS IN THE FARSIGHT OPEN SOURCE TOOLKIT 17 VIDEO BIOINFORMATICS DATABASES AND SOFTWARE UNDERSTANDING OF THE BIOLOGICAL PROCESS OF NONVERBAL COMMUNICATION: FACIAL EMOTION AND EXPRESSION RECOGNITION IDENTI?CATION AND RETRIEVAL OF MOTH IMAGES BASED ON WING PATTERNS